ROOT-ASSOCIATED FUNGAL COMMUNITY

PCA

Interactive Principal Component Analysis

2D PCA

3D PCA

Differential expression

Apply different thresholds levels for P value and Fold Change (FC) parameters (Log2FC) to visualize de DE data.

Higher expressed genes


            

            

            

            
Lower expressed genes

            

            

            

          

        

        

          
Network analysis

          
Visualize the networks and its metrics

          

            
            

              
              
            

          

          

          

          

            

          

          

            

          

          

          

          
Network metrics table

          
Select a gene to obtain its first degree neighbours

          

          

          
First degree neighbours

          

          

          

          
        

        

          
Clusters

          
Inspect the clusterized data

          

            

              
            

            

              
Cluster plot

              

              

              
              

                

                  

                    
Cluster information

                    

                    
                    

                    
Individual gene plot

                    

                    

                    
Positive profile genes

                    

                    

                    

                    
Negative profile genes

                    

                    

                  

                  

                    
Enrichment description

                    

                  

                  

                    
Plot a expression profile, using the gene names
                   from the current cluster and their vaules from the oposite
                   condition

                    
Cluster genes represented with the other condition

                    

                  

                  

                    
Description

                    

                    
Cluster genes represented in the other condition clusters

                    

                  

                

              

            

          

        

        

          
Gene explorer

          
Visualize gene expression profiles and enrich custom gene lists.

          

            

              

                
              

              

                
Eigengene plot

                

                

                
Individual gene plot

                

                

                
Mean expression profile

                

              

            

            

            

              

                
              

              

                

              

            

          

        

        

          

        

        

          
Contact info

        

      

      

        

          

          
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